Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRSSVFSFLVAFLLVVGCSHKMDNKTVAGDVSTKAVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQ-VLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGESKPKCVQKTRECYRENRRVDVKLVK
2AIZ Chain:P ((29-134))
------------------------------------------------------------------------YNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY--
General information:
TITO was launched using:
RESULT:
Template:
2AIZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3401 for 750 contacts (-4.5/contact) +
2D Compatibility (PS) -11170 + (NN) -4640 + (LL) 5068
1D Compatibility (HY) -5200 + (ID) 2050
Total energy: -21393.0 ( -28.52 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_2AIZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AIZ-query.scw
PDB file :
Tito_Scwrl_2AIZ.pdb
: