Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIFPSMGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGD--ETLVRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
1B9B Chain:A ((2-252))
TRKLILAGNWKMHKTIS-EAKKFVSLLVNELHDVKEFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKEEAKRVVIAYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGGASLKE-SFIELARIMRG---
General information:
TITO was launched using:
RESULT:
Template:
1B9B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147950 for 2118 contacts (-69.9/contact) +
2D Compatibility (PS) -27278 + (NN) -11896 + (LL) 208
1D Compatibility (HY) -18800 + (ID) 3450
Total energy: -209166.0 ( -98.76 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_1B9B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B9B-query.scw
PDB file :
Tito_Scwrl_1B9B.pdb
: