Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLIIRNKQELKEVILKQKQANKTIGFVPTMGFLHEGHMTLVSHARKE-SDFVVMSVFVNPTQFGPNEDFDAYPRDEAHDAKLAEEGGVDILFVPTVEEIYPTELSTKLHVDKRVSVLDGADREGHFDGVVTVLTKLFHLVSPDNAYFGQKDAQQVAVVSGLVEDYFFPVNLRIIATVREADGLAKSSRNVYLTEKERKEAPVIHEALQLGRKLIESGETNQAKIVQMMTEKIN-EQTSHELIAYLAIYSYPEFTPVTDWSKGIIIAAAVKYSKARLIDNELINVKRR |
3COV Chain:A ((12-289)) | LNVYSAPGDVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAA---LDAARAVLDAAP-GV-AVDYLELRDIG-LGPMP-LNGSGRLLVAARLGTTRLLDNIAIEIG-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3COV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152950 for 2288 contacts (-66.8/contact) +
2D Compatibility (PS) -29896 + (NN) -14386 + (LL) 796
1D Compatibility (HY) -19200 + (ID) 4700
Total energy: -220336.0 ( -96.30 by residue)
QMean score : 0.440
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