Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLTELVSLQSQHPDFLRLFYLLSMERSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPG--KADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEALIPVLLEET
2PBX Chain:A ((5-200))
-IEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDEV------WPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDVDNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCI---------
General information:
TITO was launched using:
RESULT:
Template:
2PBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71687 for 1422 contacts (-50.4/contact) +
2D Compatibility (PS) -20843 + (NN) -7738 + (LL) 2260
1D Compatibility (HY) -11200 + (ID) 850
Total energy: -110058.0 ( -77.40 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_2PBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBX-query.scw
PDB file :
Tito_Scwrl_2PBX.pdb
: