Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPVSYTRKDSIAVISMD-DGK-VNALGPAMQQALNAAIDNADRDDVGALVITGNGRVFSGGFDLKILTSGEVQP----AIDMLRGGFELAYRLLSYPKPVVMACTGHAIAMGAFLLSCGDHRVAAHAYNIQANEVAIGMTIPYAALEIMKLRLTRSAYQQATGLAKTFFGETALAAGFIDEIALPEVVVSRAEEAAREFAGLNQHAHAATKLRSRADALTAIRAGIDGIAAEFGL
2FBM Chain:A ((23-249))
--RDIVVKKEDGFTQIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEVMIQIKELASYNPIVLEECKALVRCNIKLELEQANE--------
General information:
TITO was launched using:
RESULT:
Template:
2FBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151823 for 1774 contacts (-85.6/contact) +
2D Compatibility (PS) -24185 + (NN) -9225 + (LL) 740
1D Compatibility (HY) -10400 + (ID) 1850
Total energy: -196743.0 ( -110.90 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_2FBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FBM-query.scw
PDB file :
Tito_Scwrl_2FBM.pdb
: