Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRPLARLRGRRVVPQRSAGELDAMAAAGAVVAAALRAIRAAAAPGTSSLSLDEIAESVIRESGATPSFLGYHGYPASICASINDRVVHGIPSTAEVLAPGDLVSIDCGAVLDGWHGDAAITFGVGALSDADEALSEATRESLQAGIAAMVVGNRLTDVAHAIETGTRAAELRYGRSFGIVAGYGGHGIGRQMHMDPFLPNEGAPGRGPLLAAGSVLAIEPMLTLGTTKTVVLDDKWTVTTADGSRAAHWEHTVAVTDDGPRILTLG
4IU6 Chain:A ((129-373))
-------------KLLSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDR-RPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHAQA------NGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRDGKRSAQFEHTLLVTDTGCEILTR-
General information:
TITO was launched using:
RESULT:
Template:
4IU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -124262 for 2165 contacts (-57.4/contact) +
2D Compatibility (PS) -27149 + (NN) -13318 + (LL) 1692
1D Compatibility (HY) -14000 + (ID) 3900
Total energy: -180937.0 ( -83.57 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_4IU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IU6-query.scw
PDB file :
Tito_Scwrl_4IU6.pdb
: