Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTAAGLSGIDLTDLDNFADGFPHHLFAIHRREAPVYWHRPTE----HTPDGEGFWSVATYAETLEVLRDPVTYSSVTGGQRRFGGT---VLQ-DLPVAGQVLNMMDDPRHTRIRRLVSSGLTPRMIRRVEDDLRRRARGLLDGVEPGAPFDFVVEIAAELPMQMICILLGVPETDRHWLFEAVEPGFDFRGSRRATMPRLNVEDAGSRLYTYALELIAGKRAEPADDMLSVVANATIDDPDAPALSDAELYLFFHLLFSAGAETTRNSIAGGLLALAENPDQLQTLRSDFELLPTAIEEIVRWTSPSPSKRRTASRAVSLGGQPIEAGQKVVVWEGSANRDPSVFDRADEFDITRKPNPHLGFG-QGVHYCLGANLARLELRVLFEELLSRFGSVRVVEPAEWTRSNRHTGIRHLVVELRGG |
3IVY Chain:A ((22-427)) | -----LPPGFDFTDPAIYAERLPVAEFAELRSAAPIWWNGQDPGKGGGF-HDGGFWAITKLNDVKEISRHSDVFSSYE-NG-VIPRFKNDIAREDIEVQRFVMLNMDAPHHTRLRKIISRGFTPRAVGRLHDELQERAQKIAAEAAAAGSGDFVEQVSCELPLQAIAGLLGVPQEDRGKLFHWSNEMTGNEDPEY---AHIDPKASSAELIGYAMKMAEEK-------IVTQLIQAD--G---EKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQWE-LYKKVR-PETAADEIVRWATPVTAFQRTALRDYELSGVQIKKGQRVVMFYRSANFDEEVFQDPFTFNILRNPNPHVGFGGTGAHYCIGANLARMTINLIFNAVADHMPDLKPISAPERLRSGWLNGIKHWQVDYTG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IVY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193229 for 3283 contacts (-58.9/contact) +
2D Compatibility (PS) -42355 + (NN) -24914 + (LL) 1104
1D Compatibility (HY) -25600 + (ID) 6900
Total energy: -291894.0 ( -88.91 by residue)
QMean score : 0.493
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