Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGAVCPGSFDPVTLGHVDIFERAAAQFDEVVVAILVNPAKT-GMFDLDERIAMVKESTTHLPNLRVQVGHGLVVDFVRSCGMTAIVKGLRTGTDFEYELQMAQMNKHI-AGVDTFFVATAPRYSFVSSSLAKEVAMLGGDVSELLPEPVNRRLRDRLNTERT
1OD6 Chain:A ((1-159))
-MHVVYPGSFDPLTNGHLDVIQRASRLFEKVTVAVLEN----QYLFSAEERLAIIREATAHLANVEAATFSGLLVDFVRRVGAQAIVKGLRAVSDYEYELQMAHLNRQLYPGLETLFILAATRYSFVSSTMVKEIARYGGDVSKLVPPATLRALKAKLG----
General information:
TITO was launched using:
RESULT:
Template:
1OD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111675 for 1197 contacts (-93.3/contact) +
2D Compatibility (PS) -17100 + (NN) -11016 + (LL) 636
1D Compatibility (HY) -16000 + (ID) 3800
Total energy: -158955.0 ( -132.79 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1OD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OD6-query.scw
PDB file :
Tito_Scwrl_1OD6.pdb
: