Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARPLAMIAALGENRAIGIDNRLPWRLPADLKHFKAMTLG----------KPVIMGRKTWDSLG---RPLPGRLNLVVSRQAGLA-LEGAEVFASLDAALARAEAWA---QAEDADELMLIGGAQLYAEAL--PRAARLYLTRVGLAPEGDAFFPEID-GAAWRLASSIE-------H-----A--AADDA-PAYAFEVWERR
3NZB Chain:X ((3-205))
QQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD
General information:
TITO was launched using:
RESULT:
Template:
3NZB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78339 for 1225 contacts (-64.0/contact) +
2D Compatibility (PS) -17735 + (NN) -1705 + (LL) 0
1D Compatibility (HY) -11600 + (ID) 2950
Total energy: -112329.0 ( -91.70 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_3NZB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NZB-query.scw
PDB file :
Tito_Scwrl_3NZB.pdb
: