Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPVEALFQPFRLGALELPTRVVMAPMTRNFSP-GGVPNAKVVEYYRRRAAAGVGLIVSEGTTVGHKAANGYPNVPRFYGEDALAGWKQVVDAVHAEGGRIVPQLWHVGSVRRLGVEPD-----ASVPGYGPMEKAKD-GKVLVHGMSKADIQEVIAAFAQAARDAQAIGMDGVEIHGAHGYLIDQFFWEGSNQRDDEYGGSLANRSRFAVELVRAVRAAVGADFPIIFRFSQWKQQDYSARLVETPEGLREFLAPLVEAGVDIFHCSTRRFWIPEF--EGSELN--LAGWTRELTGKPTITVGNVGLDGSEFLQFFGKTDEVAQPASIDGLVERLDKGEFDLVAVGRALLVDPEWAVKVREGRIGDIKPFSREALASLV |
| 3HGJ Chain:A ((2-342)) | -----ALLFTPLELGGLRLKNRLAMSPMCQYSATLEGEVTDWHLLHYPTRALGGVGLILVEATAVEPLG-RISPYDLGIWSEDHLPGLKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLGWRV-VGPSPIPFDEGYPVPEPLDEAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDW--GEGGW--SLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGLRTGAVGLITTP------------EQAE--------TLLQAGSADLVLLGRVLLRDPYFPLRAAKAL--GVAPEVPPQYQRGF |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HGJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140258 for 3041 contacts (-46.1/contact) +
2D Compatibility (PS) -36109 + (NN) -17319 + (LL) 1484
1D Compatibility (HY) -14400 + (ID) 5150
Total energy: -211752.0 ( -69.63 by residue)
QMean score : 0.547
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