Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNLLLSPLAVGNLALRNRIVMAPMTRSRAQQPGDVPTALNALYYAQRAG-A-GLIVSEGTQISHLGQGYA-YTPGIYSEAQLAGWRQVTEAVHAAGGLIAAQLWHVGRMSHRSLQ-AGGEAPIAPSPIQAKAQVFIADGQGGGSMAPADAPREMTLEDIRRVR-DEFVRAARNALDAGFDLVELHGANGYLIDQFLASASNRRSDAYGGSLENRARFLLEIVDALVAAVGAERVGLRLSPWGTINDMH----DDEPEAMTLYLAEALQR-----RGIAYLHLAEWEWSGGP----AY---PQGFRERLRERFRAPLIVCGNYD---AE--RAEAILQAGLADAVAIGRPFIANPDLVERIRLGAPLAEANQARFYGGDAAGYTDYPTLGQSATA |
| 3TJL Chain:A ((10-391)) | KDSEAFQSIKVGNNTLQTKIVYPPTTRFRAL-EDHTPSDLQLQYYGDRSTFPGTLLITEATFVSPQASGYEGAAPGIWTDKHAKAWKVITDKVHANGSFVSTQLIFLGRVADPAVMKTRGLNPVSASATYESDAA-----KE-AAEAVGNPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDTVHPLTTFSYLVHELQQRADKGQGIAYISVVEPRVSGNVDVSEEDQAGDNEFVSKIW---KGVILKAGNYSYDAPEFKTLKEDIAD-KRTLVGFSRYFTSNPNLVWKLRDGIDLVPYDRNTFYSDNNYGYNTFSMDSEEV-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TJL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168205 for 3123 contacts (-53.9/contact) +
2D Compatibility (PS) -38942 + (NN) -19712 + (LL) 540
1D Compatibility (HY) -22000 + (ID) 5850
Total energy: -254169.0 ( -81.39 by residue)
QMean score : 0.467
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