Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSTIHPLPSFGLGTFRLTGQVVVDSVRSALELGYRAIDTAQIYGNEADIGRAIAES----GVPRSELFLTTKVWVDNYAREKLLASLRESLEKLRTDRLDLVLIHWPAPGNGVELGEYMAALAEAKSLGLTRRIGVSNFNIELTRQAIAAVGAGEISTNQIELSPYLQNRALTAYLEEQGIAVTSYMTLAYGKVL--KDPTLAGIAARHRATVAQVALAWAMQLGYAVIPSSTRRENLASN-LLARDLRLDAEDMARIAGLERNGREVSPQGLAPAWD |
| 1VP5 Chain:A ((19-287)) | TLNNGVEMPILGYGVFQIPPEKTEECVYEAIKVGYRLIDTAASYMNEEGVGRAIKRAIDEGIVRREELFVTTKLWVSDVGYESTKKAFEKSLKKLQLEYIDLYLIHQPFGD----VHCAWKAMEEMYKDGLVRAIGVSNFYPDRLMDLMVHHE-IVPAVNQIEIHPFYQRQEEIEFMRNYNIQPEAWGPFAEGRKNIFQNGVLRSIAEKYGKTVAQVILRWLTQKGIVAIPKTVRRERMKENISIFD-FELTQEDMEKIATLDEGQSAFFSHRDP---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VP5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -121628 for 2229 contacts (-54.6/contact) +
2D Compatibility (PS) -28795 + (NN) -14933 + (LL) 196
1D Compatibility (HY) -14400 + (ID) 4300
Total energy: -183860.0 ( -82.49 by residue)
QMean score : 0.532
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