Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKEKFERNKPHVNVGTIGHVDHGKTTLTAALTKVCSDTW--------GGSARAF-DQIDNAPEEKARGITINTSHVEYDSAVRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDD-AELLELVEMEVRDLLNTYDFPGDDTPIIIGSALMALEGK----DDNGIGVSAVQKLVETLDSYIPEPVRAIDQPFLMPIEDVFSISGRGTVVTGRVERGIIKVQEEVEIVGIKAT----TKTTCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTI----KPHTKFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNCELP-------------EGVEMVMPGDNIKMVVTLIAPIAMED------GLRFAIREGGRTVGAGVVAKIIE |
| 3WY9 Chain:A ((5-425)) | ---------KPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE---SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMPQTKEHAFLARTLGIKHIIVTINKMDMVNYDQKVFEKVKAQVEKLLKTLGY--KDFPVIPTSAWNGDNVVKKSDKMPWYNGP---TLIEALDQ-IPEPEKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHP-----TAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQ- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WY9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192350 for 3049 contacts (-63.1/contact) +
2D Compatibility (PS) -40633 + (NN) -16933 + (LL) 712
1D Compatibility (HY) -21600 + (ID) 7100
Total energy: -277904.0 ( -91.15 by residue)
QMean score : 0.493
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