Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVEQKDKYRPCVGIMLFNKQ---GHVFIGKRFDSDSYWQMPQGGIDDGEKLEQAALRELLEEVGTDKAKIIAKNKDWIYYNLPEEVIPTCWNGRYSGQKQRWFLMKFYGEGKDININYTDHPEFKEWRWQSVDNLVAGAI-PFKKEVYKTVIEEFSSQIKVSIIK
1KTG Chain:A ((3-136))
--------VKAAGLVIYRKLAGKIEFLLLQASYPPHHWTPPKGHVDPGEDEWQAAIRETKEEANITK-EQLTIHEDCHETLFY--------EAKGKPKSVKYWLAKLNNPD---DVQ--LSHEHQNWKWCELEDAIKIADYAEMGSLLRKFSAFLAGF-------
General information:
TITO was launched using:
RESULT:
Template:
1KTG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47290 for 978 contacts (-48.4/contact) +
2D Compatibility (PS) -13376 + (NN) -3178 + (LL) 2704
1D Compatibility (HY) -2000 + (ID) 1150
Total energy: -64290.0 ( -65.74 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_1KTG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KTG-query.scw
PDB file :
Tito_Scwrl_1KTG.pdb
: