Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDILKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNVNGINNDDVIVTHDAVR--PFLTQRIIKENIEVAAK-YGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDSYRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
3Q80 Chain:A ((7-230))
EVVAIVPAAGSGERLAVG-VPKAFYQLDGQTLIERAVDGLLDSGVVDTVVVAVPADRTDEARQILG------HRAMIVAGGSNRTDTVNLALTVLS--------EPEFVLVHDAARALTPPALVARVVEALRDGYAAVVPVLPLSDTIKAVDANGVVLGTPERAGLRAVQTPQGFTTDLLLRSYQRGSL----EYTDDASLVEHIGGQVQVVDGDPLAFKITTKLDLLLAQAIVR------
General information:
TITO was launched using:
RESULT:
Template:
3Q80.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113883 for 1731 contacts (-65.8/contact) +
2D Compatibility (PS) -22615 + (NN) -4551 + (LL) 284
1D Compatibility (HY) -10000 + (ID) 2700
Total energy: -153465.0 ( -88.66 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3Q80.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q80-query.scw
PDB file :
Tito_Scwrl_3Q80.pdb
: