Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQHHKVAIIGAGAAGIGMAITLKDFG--ITDVIILEKGTVGHS-FKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIAT--T--TETYHADYIFVATGDYNF-PKKP--F-KYGIHYSEIEDFDN-------FNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNN-------------------GQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQL-FVTTN-QDIKLTTHDESTRYPNIFMIGATVENDNAK------LCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKNQMYLDDYSCCEVSCTC |
| 3NTD Chain:A ((1-338)) | --MKKILIIGGVAGGASAAARARRLSETA-EIIMFERGEYVSFANCGLPYH-------IS----G------------------EIAQRSALVLQTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVD------REMAGFAHQAIRDQ-GVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLET-DLLIMAIGVRPETQL-ARDAGLAIGELGGIKVNAMMQ-TSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGR-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NTD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186678 for 2410 contacts (-77.5/contact) +
2D Compatibility (PS) -31993 + (NN) -14251 + (LL) 3740
1D Compatibility (HY) -9200 + (ID) 2450
Total energy: -240832.0 ( -99.93 by residue)
QMean score : 0.457
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