Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTSIKLVAVDIDGTLLNSKREITPEVAKAVQEAKSKGVKIVIATGRPIIGVQDLLEE-LKLNEEGDYVITFNGGLVQDTATGDDIIKETLTYEDYLDFELLARKLGVHMHAITKEGIYTANR-DIGKYTIHEVTLVNMPLFYRT-PEEMG-DKEIIKLMMIDQPDILDAAIAKIPKKVLDNYTIVKSTPFYLEILPKNVNKGTALLHLAEKMGLTVDQTMAIGDEENDRAMLEVVGNPVVMQNGNPELKKIAKYITKSNEESGVAYALREWVIN |
| 1NF2 Chain:A ((1-262)) | --MYRVFVFDLDGTLLNDNLEISEKDRRNIEKLSR-KCYVVFASGRMLVSTLNVEKKYFKR---TFPTIAYNGAIVYLPEE-GVILNEKIPPEVAKDIIEYIKPLNVHWQAYIDDVLYSEKDNEEIKS-YAR--HSNVDYRVEPNLSELVSKMGTTKLLLIDTPERLDELKEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEKVKEASDIVTLTNNDSGVSYVLERISTD |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -151835 for 2160 contacts (-70.3/contact) +
2D Compatibility (PS) -28271 + (NN) -11662 + (LL) 576
1D Compatibility (HY) -16400 + (ID) 3750
Total energy: -211342.0 ( -97.84 by residue)
QMean score : 0.525
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