Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDYDFKAKLAAERERVEDLFEYEGCKVGRGTYGHVYKARRKDGKDEKEYALKQIEGTGI----SMSACREIALLRELKHPNVIALQKVFLSHS----DRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYFQEDPLPTLDVFAGCQIPYPKREFLNEDDPEEKGDKNQQQQQNQHQQPTAPPQQAAAPPQAPPPQQNSTQTNGTAGGAGAGVGGTGAGLQHSQDSSLNQVPPNKKPRLGPSGANSGGPVMPSDYQHSSSRLNYQSSVQGSSQSQSTLGYSSSSQQSSQYHPSHQAHRY |
| 4B99 Chain:A ((54-356)) | -----------------DEYEII-ETIGNGAYGVVSSARRR--LTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKSVYVVLDLMESDLHQIIHSSQ---------PLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNEN----CELKIGDFGMARGL------QYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNY---------VHQLQLIMMVLGTPSPAVIQ-----RVRAYIQS-LP--PRQPVPWETVYP----GADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHDPDD--------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4B99.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -189441 for 2108 contacts (-89.9/contact) +
2D Compatibility (PS) -29840 + (NN) -14084 + (LL) 5312
1D Compatibility (HY) -26000 + (ID) 4700
Total energy: -258753.0 ( -122.75 by residue)
QMean score : 0.430
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