Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKIDDKQDQRLVNDTLNQIDIP--EGYILHSDQGSVYTSYAYYQLCEEKGIIRSMSRKGTPADNAPIESFHSSLKSETLYINNQLNSSNHIVIDIVEKYIKNYNNNQIQQKLGYLSPVKYRELIA
3OYM Chain:A ((166-273))
----------TSATVKSL-NVLTSIAIPKVIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKHSDIKRLLTKLL---VGRPTKWYDLLPVVQLALNN-TYSPVLK-YTPHQLLF---
General information:
TITO was launched using:
RESULT:
Template:
3OYM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5732 for 584 contacts (-9.8/contact) +
2D Compatibility (PS) -11166 + (NN) -3303 + (LL) 1340
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -22761.0 ( -38.97 by residue)
QMean score : 0.243
(partial model without unconserved sides chains):
PDB file :
Tito_3OYM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OYM-query.scw
PDB file :
Tito_Scwrl_3OYM.pdb
: