Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLNADLKQQLKQLLELMEGNVEFVASLGSDEKSKELKELLTEISDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKNLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVAD------RIGGQVNDTAGIENFITVKE-TTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQ----LINKGVAFCPHCD--GPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVL-QDRLRSLSNVDIKTNAKTTEVVGEDH---VTGIRYEDMSTGEEHLLNLDGIFVQIGLLPNTSWLKDAVELNERGEIVIDR-NNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN |
1VDC Chain:A ((4-323)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIFT-ETVTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSN-PKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQ-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173156 for 2671 contacts (-64.8/contact) +
2D Compatibility (PS) -32160 + (NN) -4822 + (LL) 13608
1D Compatibility (HY) -20000 + (ID) 4850
Total energy: -221380.0 ( -82.88 by residue)
QMean score : 0.449
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