Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFITVTLALGMIATTGATVTSNEVSAAEKDKLPATQKAKEMQNVPYTIAVDGIMAF-NQSYLNLPKDSQLSYLDLGNKVKALLYD--ERGVTPEKIRNAKSAVYTITWKDGSKKEVDLKKD--SYTANLFDSNSIKQIDINVKTK
2J4X Chain:A ((108-209))
----------------------------------------------TIYMNIFGEQIPLKEQSKYKITFQNKFVTFQEIDVRLRKSLMSDNRIKLYEHN-SICKKGYWGIHYKDNTTKFTDLFTHPNYTDNETIDMSKVSHFDVYLNEE
General information:
TITO was launched using:
RESULT:
Template:
2J4X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17628 for 631 contacts (-27.9/contact) +
2D Compatibility (PS) -10424 + (NN) -1492 + (LL) 4232
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -30762.0 ( -48.75 by residue)
QMean score : 0.317
(partial model without unconserved sides chains):
PDB file :
Tito_2J4X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J4X-query.scw
PDB file :
Tito_Scwrl_2J4X.pdb
: