Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAEKWYDANFDQDLINERARAKDICFELNHTKPSDTNKRKELIDQLFQTTTDNVSISIPFDTDYGWNVKLGKNVYVNTNCYFMDGGQITIGDNVFIGPNCGFYTATHPLNFYHRNEGYEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNPCKVVRKIDNDLPSETLNDETIK
2P2O Chain:A ((2-184))
KSEKEKMLAGHLYNP-ADLELVKERERARRLVRLYNETLETEYDKRTGLLKELFGSTGERLFIEPNFRCDYGYNIHVGENFFMNFDGVILDVCEVRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGDNAVIASGAVVTKDVPANAVVGGNPAKVIKWL---------------
General information:
TITO was launched using:
RESULT:
Template:
2P2O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105643 for 1442 contacts (-73.3/contact) +
2D Compatibility (PS) -20331 + (NN) -12223 + (LL) 296
1D Compatibility (HY) -16400 + (ID) 3850
Total energy: -158151.0 ( -109.67 by residue)
QMean score : 0.574
(partial model without unconserved sides chains):
PDB file :
Tito_2P2O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P2O-query.scw
PDB file :
Tito_Scwrl_2P2O.pdb
: