Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEIKTFLECALKEDLGH-----GDLFERVLEKDFKATAFVRAKQEGVFSGEKYALELLQMTG--IECVQNIKDKERFKPKDTLMEIRGDFSMLLKIERTLLNLLQHSSGIATLTSRFVEALNSPKVRLLDTRKTRPLLRIFEKYSVLNGGASNHRLGLDDALMLKDTHLKHVKDLKSFLTHARKNLPFTAKIEIECESFEEAKNAMSAGADIVMCDNMSVGETKEIAAYREAHYPFVLLEASGNISLESINAYAKSGVDAISVGALIHQATFIDMHMKMA |
3PAJ Chain:A ((21-295)) | -DITRSVIDTLKEDLGGTLDPAADITASLIPADRISTATIITREAGVFCGQLWADEVFKQLGGQVSIEWHVQDGDTLTPNQTLCTLTGPARILLTGERNAMNFIQTLSGCATATARYVQELKGTQCRLLDTRKTIPGLRSALKYAVACGGGYNHRIGVFDAYLIKENHIIACGGIRQAISTAKQLN-PGKPVEVETETLAELEEAISAGADIIMLDNFSLEMMREAVKINA---GRAALENSGNITLDNLKECAETGVDYISVGALTKHLKALDLSMRFK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -154297 for 2203 contacts (-70.0/contact) +
2D Compatibility (PS) -28810 + (NN) -11633 + (LL) 348
1D Compatibility (HY) -17200 + (ID) 4850
Total energy: -216442.0 ( -98.25 by residue)
QMean score : 0.524
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