Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLEKVNEAVAKIRESYT-GTPKIGLILGSGLGVLADEVNQPIKLSYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKELGVEVLIVTNAAGGVNELYSAGDLMLISDHINFTGT---SPLIGPNDEHFGPRFPDMSEAYNLALRVDARLIAQELNL--TIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVIIANHAGLRVLGISCITNMAAGILD--QPLSHTEVIETTDQVRSTFLQYVKAIVAKIS
2P4S Chain:A ((90-368))
YTYDTLQEIATYLLE-RTELRPKVGIICGSGLGTLAEQLTDVDSFDYETIPHFPVSTVAGHVGRLVFGYLAGVPVMCMQGRFHHYEGYPLAKCAMPVRVMHLIGCTHLIATNAAGGANPKYRVGDIMLIKDHINLMGFAGNNPLQGPNDERFGPRFFGMANTYDPKLNQQAKVIARQIGIENELREGVYTCLGGPNFETVAEVKMLSMLGVDAIGMSTVHEIITARHCGMTCFAFSLITNMCTMSYEEEEEHCHDSIVGVGKNREKTLGEFVSRIVKHIH
General information:
TITO was launched using:
RESULT:
Template:
2P4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171637 for 2364 contacts (-72.6/contact) +
2D Compatibility (PS) -29160 + (NN) -11135 + (LL) -28
1D Compatibility (HY) -26800 + (ID) 6150
Total energy: -244910.0 ( -103.60 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_2P4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P4S-query.scw
PDB file :
Tito_Scwrl_2P4S.pdb
: