Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRRLDRFNAPDDTVNTLFQVYKTISFWKVLKNTLVIEFGRFFPWMGGKRKIYRVCLGMEIGEKTAIAYKVMPDLFFPEKILIGENSIIGYHTTILTHEYLLSE---YRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKEKATLT
1SSQ Chain:A ((135-241))
------------------------------------------------------AFDVDIHPAAKIGHGIMFD--HATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIVS-----
General information:
TITO was launched using:
RESULT:
Template:
1SSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104709 for 823 contacts (-127.2/contact) +
2D Compatibility (PS) -11515 + (NN) -4120 + (LL) 4948
1D Compatibility (HY) -3200 + (ID) 1500
Total energy: -120096.0 ( -145.92 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_1SSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSQ-query.scw
PDB file :
Tito_Scwrl_1SSQ.pdb
: