Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWMINNDRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIKES----GITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSPQPW--KEWRETDKHFDQGNL
1VP5 Chain:A ((16-146))
--PKVTLNNGVEMPILGYGVFQIPPEKTEECVYEAIKVGYRLIDTAASYMNEEGVGRAIKRAIDEGIVRREELFVTTKLWVSDVGYESTKKAFEKSLKKLQLEYIDLYLIHQPFGDVHCAWKAMEEMYKDGLV
General information:
TITO was launched using:
RESULT:
Template:
1VP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23313 for 935 contacts (-24.9/contact) +
2D Compatibility (PS) -13340 + (NN) -2830 + (LL) 260
1D Compatibility (HY) -12000 + (ID) 2400
Total energy: -53623.0 ( -57.35 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1VP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VP5-query.scw
PDB file :
Tito_Scwrl_1VP5.pdb
: