Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNYSGEVGLQYHLQIRPGDV--GRYVIMPGDPKRCAKIAEHFDNAVLVADSREYVTYTGTLNGEKVSVTSTGIGGPSASIAMEELKLCGADTFIRVGTCGGIDLDVKGGDIVIATGAIRMEGTSKEYAPIEFPAVADLEVTNALVNAAKKLGYTSHAGVVQCKDAFY-GQHEPERMPVSYELLNKWEAWKRLGTKASEMESAALFVAASHLGVRCGSDFLVVGNQERNALGMDNPMAHDTEAAIQVAVEALRTLIENDKSQ
2OXF Chain:F ((4-250))
-----------FHLGLTKNDLQGAQLAIVPGDPERVEKIAALMDKPVKLASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSDTFYPGQ--------------SMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAGVIVNRTQ---------KQTESHAVKIVVEAARRLL------
General information:
TITO was launched using:
RESULT:
Template:
2OXF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122956 for 1985 contacts (-61.9/contact) +
2D Compatibility (PS) -24120 + (NN) -15348 + (LL) 1764
1D Compatibility (HY) -17200 + (ID) 4750
Total energy: -182610.0 ( -91.99 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2OXF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OXF-query.scw
PDB file :
Tito_Scwrl_2OXF.pdb
: