Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIADEIQSGLACTGYPFACDHGGVLPDIYLLGKTLGGG-AVPLSAMVADREIFGVVHPGEHGSTFGGNPLAAAIGTPVVSMVVWGECQARSAKLGAHLHQRLAD-LIGDG--AVALRGLGWWADVDIERALAIGTDMSMRLADRGVLLKDTYGAALRFAPPLVITAQEIDCAVRRFADALWEAGS
4NOG Chain:A ((239-421))
LIVDEIQTGLCRTGRLLAADHDEVHPDILLLGKSLSAGVV-PISAVMGRADVMDVLKPGTHGSTFGGNPLACAVAVEALTVLKDEKLADRAERLGAQFRDCLRRELYGKVPWIKEIRGRGLLNAVEVDSDAIDPNDVVMKLKENGILSKPTRGRVMRFIPPLVITDEEHRDATTRIIKSFLAVE-
General information:
TITO was launched using:
RESULT:
Template:
4NOG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110590 for 1253 contacts (-88.3/contact) +
2D Compatibility (PS) -19055 + (NN) -5183 + (LL) 164
1D Compatibility (HY) -12800 + (ID) 3500
Total energy: -150964.0 ( -120.48 by residue)
QMean score : 0.237
(partial model without unconserved sides chains):
PDB file :
Tito_4NOG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NOG-query.scw
PDB file :
Tito_Scwrl_4NOG.pdb
: