Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNDAVPAGNFVPPLILHSDHGGSAMSSSAHRGRILHFLGDPAKLGDKAWEYFEDGLLWIEHGHVRALDHATYLLPQLPADLPLEEHPQRLLLPGFVDCHVHYPQLGVIASYGTQLLDWLETHTFPAEQRFADAGYAAAQAELFLDELLRHGTTTALVF-----GTVHAVSAEAFFQAAQKRRLRMIAGKVLMDRN-------APPALCDTAASGYAESRALIERWHG---NGRLQYAVTPRFAPTSSPEQLAAAARLLDEYPGVYLHTHLSENLKEVAWVGELFPQAQDYLDVYHRAGLVGERSVFAHGIHLSERECRCLAHKNAALAHCPSSNLFIGSGLFDLGRAQQYGIRVGIGSD-VGGGTSLSLLANLADAYKIQQLRGTSLDPFQALYLATLGGARALDLDGLVGNFLPGREADFVALDLAATPMIAQRMEHARGLADTLFVLNTLGDDRAVAETWVMGERRHVKG--------------------------- |
| 2PAJ Chain:A ((10-484)) | -----------PSTLIRN----------------AAAIMTGGRGTADDPSRVPGPDIRIVGDTIDAIGA-----LAPRPGETIVDATDCVIYPAWVNTHHH---LFQSLLKGEPFRALF------------DERRFRLAARIGLIELARSGCATVADHNYVYYPGMPFDSSAILFEEAEKLGLRFVLLRGGATQTRQLEADLPTALRPETLDAYVADIERLAARYHDASPRAMRRVVMAPTTVLYSISPREMRETAAVARRLGLRMHSHLSGK---------------SPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQSNG-----RLPVREMADAGVPVSIGVDGAASNEAADMISEVHMTWLAQRARL--ASIAEVIHWGTAGGARVMGLDE-VGKVAVGYAADIAVYRLDD--------PRYFGLHDPAIGPVASGGRPSVMALFSAGKRVVVDDLIEGVDIKELGGEARRVVRELLREVVV |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PAJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -221558 for 3398 contacts (-65.2/contact) +
2D Compatibility (PS) -41176 + (NN) -17051 + (LL) 5020
1D Compatibility (HY) -7200 + (ID) 3750
Total energy: -285715.0 ( -84.08 by residue)
QMean score : 0.402
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