Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------MGRSSRKDEILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALLEAGFARARSAEETVRLLVTSYIDWVVANPDWARFILHSRGRVEAGELGERLRADNQAHFARIHAALAGYRAEGLFR-EMPDDCFASVVIGPAHDLARQWLAGRTRVALADCRELLAQVAWDSVRAA
2PBX Chain:A ((5-200))
IEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFLTDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTR-DEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHDVDNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCIY----
General information:
TITO was launched using:
RESULT:
Template:
2PBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98487 for 1387 contacts (-71.0/contact) +
2D Compatibility (PS) -20641 + (NN) -10822 + (LL) 552
1D Compatibility (HY) -12400 + (ID) 1250
Total energy: -143048.0 ( -103.13 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_2PBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PBX-query.scw
PDB file :
Tito_Scwrl_2PBX.pdb
: