Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLKGKTALVTGSTSGIGLGIALSLAEAGADLLLNGFGEVDAALAQVRARGVRAEHHPADLSSPEQIGELMAFAERTFGGVDILVNNAGIQYVAPVQEFPTERWDAIIAINLSSVFHTTRLALPGMLARGWGRIVNIASTHGLVASAGKSAYVAAKHGVLGLTKSVALETARTPVTCNAICPGWVLTPLVQKQIDARTAEGVSPEQAEHDLLAEKQPSLAFVTPEQLGGLTLFLCSEAADQVRGAAWNMDGGWVAQ
2Q2V Chain:A ((2-255))
--LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQIDDRAANGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGWLAQ
General information:
TITO was launched using:
RESULT:
Template:
2Q2V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155349 for 2196 contacts (-70.7/contact) +
2D Compatibility (PS) -27009 + (NN) -5844 + (LL) 260
1D Compatibility (HY) -28800 + (ID) 9650
Total energy: -226392.0 ( -103.09 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_2Q2V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q2V-query.scw
PDB file :
Tito_Scwrl_2Q2V.pdb
: