Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIGHGYDVHRFGEGDFITLGGVRIPHKHGLVAHSDGDVLLHALSDALLGAAALGDIGKHFPDTDPRFKGADSRALLRHVVAIVAEKGWKVGNVDATIVAQAPKMAPHIETMRGLIAEDLGVAVDQVNVKATTTERLGFTGREEGIAVHAVALLMAR
2PMP Chain:A ((4-159))
FRIGHGFDLHRLEPGYPLIIGGIVIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRPKISPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENRSIAAHTVILLMK-
General information:
TITO was launched using:
RESULT:
Template:
2PMP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114002 for 1277 contacts (-89.3/contact) +
2D Compatibility (PS) -17212 + (NN) -11895 + (LL) 100
1D Compatibility (HY) -13200 + (ID) 3750
Total energy: -159959.0 ( -125.26 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2PMP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PMP-query.scw
PDB file :
Tito_Scwrl_2PMP.pdb
: