Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQVNMTVNGEPVTAEVEPRMLLVHFLRDQLRLTGTHWGCDTSNCGTCVVEVDGVPVKSCTMLAVMA-SGHSIRTVEGLAGPDGQLDPVQEGFMRCHGLQCGFCTPGMLITARALLDRNPDPDEQTIREAIS--GQICRCTGYTTIVRSIQWAAAHQTVKAQS
4USA Chain:A ((2-155))
IQKVITVNGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVGQP-ENLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAAAV-------
General information:
TITO was launched using:
RESULT:
Template:
4USA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135936 for 1259 contacts (-108.0/contact) +
2D Compatibility (PS) -16074 + (NN) -5084 + (LL) 588
1D Compatibility (HY) -10800 + (ID) 3000
Total energy: -170306.0 ( -135.27 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_4USA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4USA-query.scw
PDB file :
Tito_Scwrl_4USA.pdb
: