Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTDFQQYFDESHQLIRDSVRRFVEREVLPYIDEWEEAEEFPRELYLKAGAAGILGIGYPEAYGGSCEGDLFAKVAASEELMRCGSGGLVAGLGS--LDIGLPPVVKWARPEVRERVVPAVLRGEKIMALAVTEPSGGSDVANLKTRAVRDGDHYRVSGSKTFITSGVRADYYTVAVRTGGEGFAGISLLLVE-KGTAGFSVGRKLKKMGWWASDTAELFFDDCRVPAENLIGVENAGFACIMANFQSERLALAVMANMTAQLALEESLRWAREREAFGKPIGKFQVLRHRLAEMATQLEVSREFTYRQAAK-MAAGKSVIKEISMAKNFATDVADRLTYDAVQVLGGMGYMRESLVERLYRDNRILSIGGGSREIMNEIIGKQMGL |
3R7K Chain:A ((28-402)) | ------WTTPERRALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSG-GNAIDSALVTEAILAA-GGSTGVCAALFTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTGGPGYGGVSLLVIDKNS-PGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVM-QRWLAGEDVVAEVSMAKNTAVYACDYVVNEAVQIFGGMGYMRESEIERHYRDCRILGIGGGTNEIMNEVIAKRIG- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3R7K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -202745 for 3202 contacts (-63.3/contact) +
2D Compatibility (PS) -41082 + (NN) -23946 + (LL) 860
1D Compatibility (HY) -24800 + (ID) 9400
Total energy: -301113.0 ( -94.04 by residue)
QMean score : 0.540
|
|
|