Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLSKITIASDAVNVIIEISANAEPVKYEFDKELGLLRVDRFLSTAMVYPCNYGFVPNTCAGDGDPVDVLVLTQFPLAPGVLISVRPVGALLTKDEKGKDEKVLAVPVSSVDSYYDHVKNCSDLPKNLLDKITHFFLHYKDLEKEKTVTVGEWVDAEKAKKIVESAIKSRN
3Q9M Chain:B ((15-168))
----------EVVYALIEIPKGSR-NKYELDKKTGLLKLDRVLYSPFFYPVDYGIIPQTWYDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVE--DPYFNDWKDISDVPKAFLDEIAHFFQRYKELQG-KTTKIEGWGNAEEAKREILRAIEMYK
General information:
TITO was launched using:
RESULT:
Template:
3Q9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88259 for 1163 contacts (-75.9/contact) +
2D Compatibility (PS) -16359 + (NN) -3106 + (LL) 1048
1D Compatibility (HY) -15200 + (ID) 3400
Total energy: -125276.0 ( -107.72 by residue)
QMean score : 0.562
(partial model without unconserved sides chains):
PDB file :
Tito_3Q9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q9M-query.scw
PDB file :
Tito_Scwrl_3Q9M.pdb
: