Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVD-------EFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
1OCX Chain:A ((72-181))
------------------------------------------------------NIFLGNNFFANFDCVML--DVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKK--
General information:
TITO was launched using:
RESULT:
Template:
1OCX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81102 for 780 contacts (-104.0/contact) +
2D Compatibility (PS) -10995 + (NN) -1025 + (LL) 5852
1D Compatibility (HY) -6000 + (ID) 2200
Total energy: -95470.0 ( -122.40 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1OCX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OCX-query.scw
PDB file :
Tito_Scwrl_1OCX.pdb
: