Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKE---GKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
3M9Y Chain:A ((2-254))
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQG---LEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIG--KSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
General information:
TITO was launched using:
RESULT:
Template:
3M9Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94937 for 2117 contacts (-44.8/contact) +
2D Compatibility (PS) -27521 + (NN) -16997 + (LL) -28
1D Compatibility (HY) -30400 + (ID) 12300
Total energy: -182183.0 ( -86.06 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_3M9Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M9Y-query.scw
PDB file :
Tito_Scwrl_3M9Y.pdb
: