Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKSVAIIGAGITGLSSAYFLKQQDPNIDVTIFEASNRPGGKIQSYRKDGYMIELGPESYLGRKTIMTELAKDIGLEQDIVTNTT-GQSYIFAKNKLYPIPGGSIMGIPTDIKPFVTTKLISPLGKLRAGLD-LIKKPIQMQDGDISVGAFFRARLGNEVLENLIEPLMGGIYGTDIDKLSLMSTFPNFKEKEEAFGSLIKGMKDEKN-KRLKQRQ-LYPGAPKGQFKQFKHGLSSFIEALEQDVKNKGVTIRYNTSVDDIITSQK------QYKIVYS-----NQQEDVFDGVLVTTPHQVFLNWF--GQD-PAF-DYFKTMDSTTVATVVLAFDEKDIENTYDGTGFVIARTSD---TDITACTWTSKKWPFTTPEGKVLIRAYVGKPGDTVVDDHTDNELVSIVRRDLSQMMTFKGDPEFTIVNRLPKSMPQYHVGHIQQIRQIQAHIKQTYPRLRVTGASFEAVGLPDCITQGKVAAEEVIAEL |
| 1SEZ Chain:A ((13-493)) | -AKRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPS--------NPIDLIKSNFLSTGSKLQMLLEPILW-------SHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLS------KTSANKKRQRGSFSFLGGMQTLTDAICKDLRED--ELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLEGFGVLVPSKEQQHGLKTLGTLFSSMMFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAID-KMEKNLPGLFYAGNHRGGLSVGKALSSGCNAADLVISYL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SEZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192255 for 3763 contacts (-51.1/contact) +
2D Compatibility (PS) -47513 + (NN) -16311 + (LL) 1436
1D Compatibility (HY) -29200 + (ID) 5500
Total energy: -289343.0 ( -76.89 by residue)
QMean score : 0.464
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