Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDT-FGEPLTEKTLNACKRADAILLGAIGGPKWTDPNNRPEQG-LLKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHEALDSLTYTREEIERIVHVAFKLAASR-RGKLTSVDKENVLA-SSKLWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFSNDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPDAADELEQHIYNMIEHGQ-TTADLGGK---LNTTDIFEILSQKLNH |
2D1C Chain:A ((18-356)) | GRKLITVIPGDGIGPECVEATLKVLEAA----KAPLAYEVREAGASVFRRGIASGVPQETIESIRKTRVVLKGPLETPVGY-----GEKSANVTLRKLFETYANVRPVREFPNV--PTPYA---GRGIDLVVVRENVEDLYAGIEHMQTPSVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGN-EVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRY-LEEFATADLIENALLYTLEEGRVLTGDVVGYDRGAKTTEYTEAIIQNLG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D1C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -170477 for 2939 contacts (-58.0/contact) +
2D Compatibility (PS) -35995 + (NN) -17476 + (LL) -36
1D Compatibility (HY) -18000 + (ID) 5500
Total energy: -247484.0 ( -84.21 by residue)
QMean score : 0.514
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