Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDLSYSLERVLQEDPAARNKWEVLLLYPGIHALLCYRLAHALHKRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTITKDR
1SSQ Chain:A ((76-241))
--CAACDIQAVRHRDPAVELWSTPLLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGKYAKIGANSVVLNPVPEYATAAGVPARIVS---
General information:
TITO was launched using:
RESULT:
Template:
1SSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135923 for 1371 contacts (-99.1/contact) +
2D Compatibility (PS) -17551 + (NN) -5247 + (LL) 472
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -172949.0 ( -126.15 by residue)
QMean score : 0.626
(partial model without unconserved sides chains):
PDB file :
Tito_1SSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SSQ-query.scw
PDB file :
Tito_Scwrl_1SSQ.pdb
: