Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIRKIAIAALSVVVAGSLLTACGGGNSKSDDNGKTKVTFWAAP--NPTQVKYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSAIASKTAPTMSENINRSFAAQLADSKAIVPLNDVKGLDDVVKERNMSE----TMDSWKFSDGNQYVLPVYSNPILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRWFDFFPLYDAASKGNAFVEDGKLVADDKAGTELLTFMSELQKNKLLLASKATDPFETGTSIMADN----GPWTFPNWDEKFPELKYNENYAITAPLVPDSMVNEENVATYADSKGVVMYAQATDKEKEAAMDFLKFVYNDDKNDLKFLETTNLIPARDDATENETFTAFFKENPELEVYAANVPYSIPAMDDAKYNDIQQIIGEEAWNPIVR----GEKKPTKAWSDMKKAEDGVLQE |
| 4R2F Chain:A ((38-431)) | -----------------------------------GAIKFWDMPWATPAYNDAAKKIAEGFSGANSKATYQIIQWN---NFYQTFSSAIASKTGPAVS-TGGGFQAFQFEEQGQIAYADKV--IEKLKSNGQFDDFLPGVVEPFKTSKG-YVAVPWQLDIRPLWYRKSLFEKAGVGVPT-DWASLLEAGKKLKGVGA--VGFATGSGAGNNIGNHLMIMMMLN---NGGGVFTKDGELDVLNDRNVEAVEFLLELVSNGVIDPAAVSYTTDNLNAQWKDSKAAYGMLTL-----GVPERVGDTSGDIVVASPIAGPHGDKAALIFPNN--IMMYTNTPS--QEASEEFVVY-YLGKLKELWQQKLMNALPVFKSITEMPEFTAD-PNNVKIVNEYVPIAKTFASQGTALSANLAALDGGQALNQFTQTVLTGKTDAKSALTAFDTGLKSVLKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -51934 for 3288 contacts (-15.8/contact) +
2D Compatibility (PS) -40251 + (NN) -11522 + (LL) 2288
1D Compatibility (HY) -9200 + (ID) 3950
Total energy: -114569.0 ( -34.84 by residue)
QMean score : 0.369
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