Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LNVRANRVSEQMKKELGDILNRKIKDPRLGFVTVTGVDVTGDLQEAKVFISILGTDKEKENTLLALAKAHGFIRSEIGRRIRLRKVPEMSFEIDNSIAYGNRIDELLRDLNNDQ
2DYJ Chain:A ((4-93))
---GKAHLEAQLKRALAEEIQ-ALEDPRLFLLTVEAVRLSKDGSVLSVYVEAFREE---EGALRALSRAERRLVAALARRVRMRRLPRLEFLPWRAS-----------------
General information:
TITO was launched using:
RESULT:
Template:
2DYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63800 for 644 contacts (-99.1/contact) +
2D Compatibility (PS) -9547 + (NN) -3332 + (LL) 1372
1D Compatibility (HY) -6800 + (ID) 1150
Total energy: -83257.0 ( -129.28 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_2DYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYJ-query.scw
PDB file :
Tito_Scwrl_2DYJ.pdb
: