Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKLKQETIAAQIGNRKCERTGAVNMPVYFSTAYQHADLGV-----STGYDYTRTGNPTRDALQEALAELENGTHAFATSSGMSAIQ-LVFQLFKTGEHIISSQDLYGGTFRYFEQFGAQYQIGFSYWDGAEIADLEKLIRPETKAIFIETPTNPLMQETDIATVAKWAHAHDLLVIVDNTFYTPVLQQPLSLGADIVIHSATKYLGGHNDVLA-GAVIVKEEKLGKFFFDQ--LNATGTVLSPFDSWLLIRGLKTLVLRVRQHQANAQKIAAFLEEHKLVEEVRYP----------------GRGGMISFFIRDA-ALVSPLLKELELFTFAESLGGVESLITYPTTQTHADIPVELRNSYGLTDKLLRISVGIEASEDLIADLSKALDAVLEEVSARG |
2RFV Chain:A ((5-397)) | -RTYGFNTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARF--GYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHG-DVIGGIIVGK-QEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKAT------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2RFV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -242294 for 3154 contacts (-76.8/contact) +
2D Compatibility (PS) -39633 + (NN) -22502 + (LL) 704
1D Compatibility (HY) -25200 + (ID) 7300
Total energy: -336225.0 ( -106.60 by residue)
QMean score : 0.545
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