Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLEKVNEAVAKIRESYT-GTPKIGLILGSGLGVLADEVNQPIKLSYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKELGVEVLIVTNAAGGVNELYSAGDLMLISDHINFTGT---SPLIGPNDEHFGPRFPDMSEAYNLALRVDARLIAQELNL--TIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVIIANHAGLRVLGISCITNMAAGILD--QPLSHTEVIETTDQVRSTFLQYVKAIVAKIS
1TCV Chain:A ((7-285))
ANIENVKKVAHHIQK-LTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTS---HSGNLIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVLDVESD-----------GAQRAELMQSWFEKIIEKLP
General information:
TITO was launched using:
RESULT:
Template:
1TCV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188227 for 2217 contacts (-84.9/contact) +
2D Compatibility (PS) -27600 + (NN) -12775 + (LL) 976
1D Compatibility (HY) -27600 + (ID) 5750
Total energy: -260976.0 ( -117.72 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1TCV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TCV-query.scw
PDB file :
Tito_Scwrl_1TCV.pdb
: