Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLENDIKKVLYSEEDIILKTKELGAKLTADYA------GKNPLLVGVLKGSVPFMAELLKHIDT---HVEIDFMVVSSYHGGTTSSGEVKILKDVDTNIEGRDVIFIEDIIDTGRTLKYLRDMFKYRQANSVKVATLFDKPEGRLVDIDADYVCYDIPNEFIVGFGLDYAENYRNLPYVGVLKEEIYSK
1PZM Chain:A ((20-202))
--YPMSARTLVTQEQVWAATAKCAKKIAADYKDFHLTADNPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFICAS-------------MLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKPASLKTVVLLDKPSGRKVDVLVDYPVITIPRAFVIGYGMDFAESYRELRDICVLKKE----
General information:
TITO was launched using:
RESULT:
Template:
1PZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114804 for 1229 contacts (-93.4/contact) +
2D Compatibility (PS) -17285 + (NN) -3594 + (LL) 716
1D Compatibility (HY) -18000 + (ID) 2850
Total energy: -155817.0 ( -126.78 by residue)
QMean score : 0.519
(partial model without unconserved sides chains):
PDB file :
Tito_1PZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PZM-query.scw
PDB file :
Tito_Scwrl_1PZM.pdb
: