Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHSSWHDLIKRELPNHYYNKINTFMDAVYESGIVYPPRDKVFNAIQITPLENVKVVIIGQDPYHGPQQAQGLSFSVPDNLPAPPSLQNILKELAEDI-GSRSHHDLTSWAQQGVLLLNACLTVPEHQANGHAGLIWEPFTDAVIKVVNQKETPVVFILWGGYARKKKSLIDNPIHHIIESPHPSPLSAYRGFFGSRPFSRTNHFLEEEGINEIDWLN
3WDF Chain:A ((1-215))
---MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPHLQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANTYLESVGKSPINWCE
General information:
TITO was launched using:
RESULT:
Template:
3WDF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111922 for 1743 contacts (-64.2/contact) +
2D Compatibility (PS) -23044 + (NN) -13458 + (LL) 316
1D Compatibility (HY) -22400 + (ID) 5350
Total energy: -175858.0 ( -100.89 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3WDF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WDF-query.scw
PDB file :
Tito_Scwrl_3WDF.pdb
: