Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKWTAADIPDQTGRTAVITGANTGLGFETAAALAAHGAHVVLAVRNLDKGKQAAARITEATPGAEVELQELDLTSLASVRAAAAQLKSDHQRIDLLINNAGVMYTPRQTTADGFEMQFGTNHLGHFALTGLLIDRLLPVAGSRVVTISSVGHRIRAAIHFDDLQWE-RRYRRVAAYGQAKLANLLFTYELQRRLAPG-GTTIAVASHPGVSNTEVVRNMPRPLVAVAAILAPLMQDAELGALPTLRAATDPAVRGGQYFGPDGFGEIRGYPKVVASSAQSHDEQLQRRLWAVSEELTGVVYPVG |
3RD5 Chain:A ((4-290)) | -TGWTAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGV----SGADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLT----DRVVTVSSMAHWP-GRINLEDLNWRSRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNL------------------ATDADFGARQTLYAASQDL-PGDSFVGPRFGY--LGRTQPVGRSRRAKDAGMAAALWALSEQLTKTEFP-- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3RD5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -122643 for 2416 contacts (-50.8/contact) +
2D Compatibility (PS) -29357 + (NN) -16878 + (LL) 2860
1D Compatibility (HY) -18800 + (ID) 6700
Total energy: -191518.0 ( -79.27 by residue)
QMean score : 0.531
|
|
|