Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHSRLIGALTVVAIIVTACGSQPKSQPAVAPTGDAAAATQVPAGQTVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAA-SHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTALTSR
4NMU Chain:A ((9-146))
--------------------------------------------MQIGKEAPNFVVTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIALDADETDIAVKNFVNQYGL-KFPVAIDKGQKIIGTYGVGPLPTSFLIDKDGKVVEQIIGEQTKEQLEGYLKKIT--
General information:
TITO was launched using:
RESULT:
Template:
4NMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92543 for 1042 contacts (-88.8/contact) +
2D Compatibility (PS) -14239 + (NN) -5643 + (LL) 3356
1D Compatibility (HY) -10000 + (ID) 1600
Total energy: -120669.0 ( -115.81 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_4NMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NMU-query.scw
PDB file :
Tito_Scwrl_4NMU.pdb
: