Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPALVVGPAAWHAVHVTQSSSAITPGQTAELYPGDIKSVLLTAEQIQARIAELGEQIGNDYRELSATTGQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYGSSTSSSGVVRILKDLDRDIHGRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIGTLDPRVYQ
4QRI Chain:A ((30-200))
----------------------------------SDILHPRFSREDISQKVKSLALQISEDYKK------LNPIFICVLKGGVYFFTDLTREIPFSVEINFVQAR----------KIELLKDIDIDLSDRHVIIVEDILDTGFTLQYLVRHIFTRNPASLEIVTLLLKE-----EFPVKYIGWRIPDEFLVGYGLDFDGRYRNLPDIHVLEP----
General information:
TITO was launched using:
RESULT:
Template:
4QRI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145042 for 1176 contacts (-123.3/contact) +
2D Compatibility (PS) -17075 + (NN) -4177 + (LL) 3104
1D Compatibility (HY) -21200 + (ID) 3400
Total energy: -187790.0 ( -159.69 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_4QRI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QRI-query.scw
PDB file :
Tito_Scwrl_4QRI.pdb
: