Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDSEKSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD--LTVAKLDVDT-NPETARNFQV-VSIPTLILFKDGQPVKRIVGAKGKAALLRELSDVVPNLN
2TRX Chain:A ((1-108))
---SDKIIHL-TDDSFDTDVLKAD-GAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNID-QNPGTAPKYGIR-GIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLA---
General information:
TITO was launched using:
RESULT:
Template:
2TRX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56610 for 746 contacts (-75.9/contact) +
2D Compatibility (PS) -11276 + (NN) -3488 + (LL) 404
1D Compatibility (HY) -9200 + (ID) 2400
Total energy: -82570.0 ( -110.68 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_2TRX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TRX-query.scw
PDB file :
Tito_Scwrl_2TRX.pdb
: